Publications

Dawna Bagherian, James Gornet, Jeremy Bernstein, Yu-Li Ni, Yisong Yue, Markus Meister. “Fine-Grained System Identification of Nonlinear Neural Circuits,” in Proceedings of the 27th ACM SIGKDD Conference on Knowledge Discovery & Data Mining, 2021. [SIGKDD] [ArXiv]

Yujia Huang, James Gornet, Sihui Dai, Zhiding Yu, Doris Y. Tsao, Anima Anandkumar. “Neural Networks with Recurrent Generative Feedback,” in Advances in Neural Information Processing Systems 32, 2020. [NeurIPS] [ArXiV] [Full-Text]

James Gornet, Kannan Umadevi Venkataraju, Arun Narasimhan, Nicholas Turner, H. Sebastian Seung, Pavel Osten, Uygar Sümbül. “Reconstructing neuronal anatomy from whole-brain images,” in 2019 IEEE 16th International Symposium for Biomedical Imaging, 2019. [ISBI] [ArXiV] [Full-Text]

Kannan Umadevi Venkataraju, James Gornet, Gayathri Murugaiyan, Zhuhao Wu, Pavel Osten. “Development of brain templates for whole brain atlases,” Proc. SPIE 10865, Neural Imaging and Sensing, 2019, 1086511. [SPIE]

Eric Szelenyi, Danielle Fisenne, Joseph E Knox, Julie A Harris, James A Gornet, Ramesh Palaniswamy, Yongsoo Kim, Kannan U Venkataraju, Pavel Osten. "A brain network basis of Fragile X syndrome behavioral penetrance determined by X chromosome inactivation in female mice," In Review, 2018. [bioRxiv]

Presentations

James Gornet, Kannan Umadevi Venkataraju, Uygar Sümbül, Pavel Osten. “Generating brain atlases across diverse brain sample types.” Society for Neuroscience, San Diego, CA. November 2018.

Kannan Umadevi Venkataraju, James Gornet, Janelle Collins, Zainab Khaku, Kadeem Joseph, Nicholas Cain, Pavel Osten. “Whole mouse brain light sheet atlas with iDISCO+ in CCF space.” Society for Neuroscience, Washington, DC, November 2017.

Projects

James Gornet, Nicholas Turner, Kisuk Lee. "NeuroTorch: A framework for reconstructing neuronal morphology from optical microscopy images," 2018. [GitHub]